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Qualimap: Evaluating next generation sequencing alignment data

Qualimap Evaluating next generation sequencing alignment data

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Qualimap: Evaluating next generation sequencing alignment data | qualimap.bioinfo.cipf.es Reviews
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Qualimap Evaluating next generation sequencing alignment data
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Qualimap: Evaluating next generation sequencing alignment data | qualimap.bioinfo.cipf.es Reviews

https://qualimap.bioinfo.cipf.es

Qualimap Evaluating next generation sequencing alignment data

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Qualimap: Evaluating next generation sequencing alignment data

http://qualimap.bioinfo.cipf.es/archive.html

Version 2.2.1 - October 4, 2016. Qualimap v2.2.1.zip. Qualimap v2.2.1 src.zip. BAM QC: fixed issue with paired-end reads only singletons (reported by Anrold Liao). BAM QC: adapted novel SAM flag for multiple alignment segments ( reported by Alexis Groppi). BAM QC: fixed issue with mapping quality report inside regions (reported by Teresa Requena). BAM QC: added support for counting Ns in read alignments. BAM QC: fixed issue with chromosome limit in coverage plot. Version 2.2 - January 29, 2016. BAM QC: f...

2

Contents — Qualimap 2.2.1 documentation

http://qualimap.bioinfo.cipf.es/doc_html/index.html

Qualimap 2.2.1 documentation. Installing Qualimap on Ubuntu. Starting a new analysis. Viewing the results of the analysis. Enter search terms or a module, class or function name.

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Configuration — bcbio-nextgen 1.0.2 documentation

http://bcbio-nextgen.readthedocs.io/en/latest/contents/configuration.html

Multiple files per sample. Sample or run specific resources. Common Workflow Language (CWL). Two configuration files, in easy to write YAML format. Specify details about your system and samples to run:. High level information about the system, including locations of installed programs like GATK and cores and memory usage (see Tuning core and memory usage. Details about a set of samples to process, including input files and analysis options. You configure these for each set of samples to process. Input, w...

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Notes: Bioinformatics Open Source Conference 2015 day 1 morning — Holly Bik and Data Science | Small Change Bioinformatics

https://smallchangebio.wordpress.com/2015/07/10/bosc2015day1a

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Qualimap: Evaluating next generation sequencing alignment data

How does it work? Is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts. Supported types of experiments include:. RNA-seq (speical mode available). Qualimap examines sequencing alignment data in SAM/BAM. Starting from version 2.0 Qualimap provides multi-sample. Comparison of alignment and counts data. Of Centro de Inve...

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